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If you want to have the rainbow colors that the PDB uses for single chain proteins, you can use the Color Rainbow node connected to the Set Color node like this:

If you want per-chain coloring, you can use the Color Chain ... node which is different for each structure:

The different nodes used for coloring can be found here: https://bradyajohnston.github.io/MolecularNodes/nodes/color.html

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@BobSherunkle
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