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extra ID columns in output metadata

Status: Open.

#95 In COG-UK/grapevine;

· benjamincjackson opened on Aug 8, 2020

swap to jclusterfunk for phylotype and new uk lineage tip annotation

Status: Open.

#93 In COG-UK/grapevine;

· benjamincjackson opened on Aug 6, 2020

Is the list of sequencing centres for report generation up to date

Status: Open.

#92 In COG-UK/grapevine;

· benjamincjackson opened on Aug 5, 2020

Visualise insertions relative to the reference

outputs

Status: Open.

#84 In COG-UK/grapevine;

· benjamincjackson opened on Jul 14, 2020

Switch to cutting out trees using gotree for the nextflow treetime utility script

enhancementNew feature or requestNew feature or request

Status: Open.

#82 In COG-UK/grapevine;

· benjamincjackson opened on Jul 9, 2020

Sort metadata outputs by date (newest first)

enhancementNew feature or requestNew feature or request

Status: Open.

#77 In COG-UK/grapevine;

· benjamincjackson opened on Jul 4, 2020

Break ties in bio_sample_ID deduplication by genome completeness

enhancementNew feature or requestNew feature or request

Status: Open.

#72 In COG-UK/grapevine;

· benjamincjackson opened on Jun 24, 2020

Add documentation

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#68 In COG-UK/grapevine;

· benjamincjackson opened on Jun 12, 2020

Create a UK lineage typing tool

enhancementNew feature or requestNew feature or request

Status: Open.

#62 In COG-UK/grapevine;

· rambaut opened on May 26, 2020

Investigate faster tree building approaches

enhancementNew feature or requestNew feature or request

Status: Open.

#41 In COG-UK/grapevine;

· rambaut opened on May 18, 2020

Create down-sampled GISAID data set to use for CoG-UK background

enhancementNew feature or requestNew feature or request

Status: Open.

#40 In COG-UK/grapevine;

· rambaut opened on May 18, 2020