A grammar of graphics for comparative genomics

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

R package for extracting and visualizing mutational patterns in base substitution catalogues

An R package designed for drawing gene arrow maps

Reading, querying and writing GWAS summary data in VCF format

Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

🌿 🍞 Large scale ancestry inference from PCA data

A modular multi-step graph generator

synthspot: package to generate synthetic Visium-like spot data

Supporting data for Cannabis genetics manuscript

Supplementary materials for "Learning LWF Chain Graphs: an Order-Independent Algorithm."

Supplementary materials for "Learning LWF Chain Graphs: A Markov Blanket Discovery Approach"