A parallel implementation of gzip for modern multi-processor, multi-core machines.

A versatile pairwise aligner for genomic and spliced nucleotide sequences

De novo assembler for single molecule sequencing reads using repeat graphs

Official home of genome aligner based upon notion of Cactus graphs

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

Sequence-to-graph mapper and graph generator

Fast and accurate de novo assembler for long reads

Align proteins to genomes with splicing and frameshift

Program for aligning DNA sequences, a pairwise aligner.

Yet another k-mer analyzer

Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.

Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome

PHAST

DNA multiple sequence aligner, official version from Penn State's Miller Lab

fork of the GPU genome aligner