Enhanced version of the FastQTL QTL mapper

A complete tool set for molecular QTL discovery and analysis

Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue

Performant Pythonic GenomicRanges

Pipeline to run scE2G

🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species

A small R package to make sequencing read coverage plots in R.

This repository hosts a minimal version of a Python API for BPNet.

Website for checking the SpliceAI, Pangolin, and other predictor scores for variant(s) of interest.

A framework to score and analyze variant effects genome-wide using ChromBPNet models

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

Construct custom transcript annotations for Salmon

RNA-seq prediction with deep convolutional neural networks.

Autoware Mini is a minimalistic Python-based autonomy software.

Evaluating Steering Models using VISTA Driving Simulator

A concise but complete full-attention transformer with a set of promising experimental features from various papers

Let us control diffusion models!

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

Generative Tensorial Reinforcement Learning (GENTRL) model

Fully batched seq2seq example based on practical-pytorch, and more extra features.