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u-delineate

u-delineate (previous named Filament Analysis) Package is a MATLAB package for segmentation of filament and the orientation.

It is associated with the paper, Vimentin Intermediate Filaments Template Microtubule Networks to Enhance Persistence in Cell Polarity and Directed Migration, Cell Systems, 2016, 3(3):252-263.e8, written by Zhuo Gan, Liya Ding, Christoph J. Burckhardt, Jason Lowery, Assaf Zaritsky, Karlyndsay Sitterley, Andressa Mota, Nancy Costigliola, Colby G. Starker, Daniel F. Voytas, Jessica Tytell, Robert D. Goldman, Gaudenz Danuser.

Software Updates

New in Version 1.2 (Dec 17th, 2024):

  • Enhanced steps 3 to 5 for improved functionality: folder icons function correctly to access results, and results buttons reliably display the results.

New in Version 1.1 (May 15th, 2024):

  • Improved the running time of step 5 Filament Segmentation Process.

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A Matlab package for segmentation of filament and the orientation.

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