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igv Public
Forked from igvteam/igvIntegrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Java MIT License UpdatedNov 20, 2024 -
igv-reports Public
Forked from igvteam/igv-reportsPython application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.
Python MIT License UpdatedAug 11, 2024 -
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flask-hello-world Public
Forked from render-examples/flask-hello-worldFlask Hello World Example for Render
Python MIT License UpdatedSep 6, 2023 -
gffutils Public
Forked from daler/gffutilsGFF and GTF file manipulation and interconversion
Python MIT License UpdatedJul 10, 2023 -
SnatchV2 Public archive
Online server for snatch, a word game regularly played at IIT Bombay.
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pybedtools Public
Forked from daler/pybedtoolsPython wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
Python Other UpdatedMay 11, 2023 -
samtools Public
Forked from samtools/samtoolsTools (written in C using htslib) for manipulating next-generation sequencing data
C Other UpdatedMay 6, 2023 -
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tidybiology Public
Forked from tidybiology/tidybiologyThe Tidybiology package containing datasets and utility functions for learning
HTML Other UpdatedSep 29, 2021 -
svtyper Public
Forked from hall-lab/svtyperBayesian genotyper for structural variants
Python MIT License UpdatedJun 8, 2021 -
pysradb Public
Forked from saketkc/pysradbPackage for fetching metadata and downloading data from SRA/ENA/GEO
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 24, 2021 -
GoJS Public
Forked from NorthwoodsSoftware/GoJSJavaScript diagramming library for interactive flowcharts, org charts, design tools, planning tools, visual languages.
JavaScript Other UpdatedSep 24, 2020 -
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CloudConductor Public
Forked from jaganmskcc/CloudConductorCloudConductor is a workflow management system that generates and executes bioinformatics pipelines
Python UpdatedNov 20, 2019 -
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biopython Public
Forked from biopython/biopythonMy fork of the BioPython repo where I test custom branches
Python Other UpdatedSep 18, 2019 -
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genpipes_fork Public
Genpipes fork with incorporation of flowchart creation engine
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genpipes_flowchart Public
Automating flowchart creation for GenPipes pipeline runs
Python UpdatedFeb 27, 2019 -
Misc_scripts Public
Collection of miscellaneous scripts that do not warrant a new repo
Python UpdatedDec 24, 2018 -
Calling_SNPs_Indels Public
Code for calling SNPs and Indels for and Assignment for CBB520 by Fred Dietrich at Duke, Fall 2018
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Snatch Public
Creating a multi player SNATCH game using the Evennia game engine
Python UpdatedMar 3, 2018 -
optimal_phage Public
We are trying to understand the impact of environmental stresses on the coexistence of phage-bacteria systems
Python MIT License UpdatedJan 22, 2018 -
Surveying and implementing algorithms to infer regulatory networks from gene expression data and calculate sample-specific scores for individual pathways
Python MIT License UpdatedDec 2, 2017 -
GWAS_PLINK Public
Using PLINK and implementing ML methods for GWAS from Chloe-Agathe Azenott's workshop on efficient biomarker discovery
MIT License UpdatedNov 26, 2017 -
SamSpecCoEN Public
Forked from chagaz/SamSpecCoENBuild sample-specific co-expression networks.
Jupyter Notebook MIT License UpdatedMar 21, 2017
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