Extracted system prompts from ChatGPT (GPT-5.4, GPT-5.3, Codex), Claude (Opus 4.6, Sonnet 4.6, Claude Code), Gemini (3.1 Pro, 3 Flash, CLI), Grok (4.2, 4), Perplexity, and more. Updated regularly.

A curated list of Claude Skills.

CpGPT: a Foundation Model for DNA Methylation.

A suite of tools for methylation analysis

Foundation Models for Genomics & Transcriptomics

Large language model Mistral for DNA

Tutorial on large language models for genomics

DECIDIA: Deep-learning for Early Cancer Interception and DIAgnosis

Papers with code for single cell related papers

A Cellular Regulatory Network-Aware Transcriptomics Foundation Model

B-cell repertoire and clonal family tree explorer

Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜

configuration for spacemacs

apricot implements submodular optimization for the purpose of selecting subsets of massive data sets to train machine learning models quickly. See the documentation page: https://apricot-select.rea…

mgatk: mitochondrial genome analysis toolkit

An R package for detecting and visualizing Kataegis events

Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow

Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021

quantitative PCR analysis in the tidyverse

Scripts to build an **unofficial** Rtools-esq installer for the macOS R toolchain

GNU Fortran (and GCC) compilers for macOS

A collection of tools for Hi-C data analysis

Main repo:

📓 eLabFTW is the most popular open source electronic lab notebook for research labs.

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing