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ERROR: skani returned a non-zero exit code./ERROR: Controlled exit resulting from an unrecoverable error or warning.

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#675 In Ecogenomics/GTDBTk;

· mrraoyz opened on Nov 23, 2025

gtdbtk install and pplacer crash

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#674 In Ecogenomics/GTDBTk;

· minhasbushra opened on Nov 17, 2025

Error witnessed while running gtdbtk classify_wf

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#673 In Ecogenomics/GTDBTk;

· 18AS opened on Nov 3, 2025

Unexpected Skani result format

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

next versionUpcoming feature/fix in staging branch.Upcoming feature/fix in staging branch.

Status: Open.

#672 In Ecogenomics/GTDBTk;

· AroneyS opened on Oct 28, 2025

ANI-based species assignment limitation in GTDB-Tk

enhancementProposed feature or change to GTDB-Tk.Proposed feature or change to GTDB-Tk.

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

next versionUpcoming feature/fix in staging branch.Upcoming feature/fix in staging branch.

Status: Open.

#671 In Ecogenomics/GTDBTk;

· pchaumeil opened on Oct 20, 2025

EXCEPTION: PplacerException MESSAGE: An error was encountered while running pplacer.

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#670 In Ecogenomics/GTDBTk;

· RKTgbrc opened on Oct 17, 2025

EXCEPTION: ValueError MESSAGE: "__StageLogger" object has no field "version"

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

next versionUpcoming feature/fix in staging branch.Upcoming feature/fix in staging branch.

Status: Open.

#669 In Ecogenomics/GTDBTk;

· RKTgbrc opened on Oct 9, 2025

ERROR: An error was encountered while running tog. ERROR: Controlled exit resulting from an unrecoverable error or warning.

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#668 In Ecogenomics/GTDBTk;

· ducphuc2000 opened on Oct 9, 2025

Provide pre-computed skani sketches for the GTDB database

next versionUpcoming feature/fix in staging branch.Upcoming feature/fix in staging branch.

Status: Open.

#665 In Ecogenomics/GTDBTk;

· fplazaonate opened on Sep 16, 2025

Discrepant Family-Level Classification Despite >99.9% ANI

Status: Open.

#652 In Ecogenomics/GTDBTk;

· sarehaghababaee opened on Aug 1, 2025

GTDB won't stop running and produce results

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#628 In Ecogenomics/GTDBTk;

· lyisrae1 opened on Mar 28, 2025

Bacterial GTDB-Tk classification file does not exist error when using gtdb_to_ncbi_majority_vote.py

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#595 In Ecogenomics/GTDBTk;

· schmittel opened on Jun 22, 2024