zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

Cell type prioritization in single-cell data

R package for pathway analysis in scRNA-seq data

Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.

A pipeline for Nanopore single cell isoform quantification in R

Code for the analysis of 'Decoding injury responsive enhancers in the CNS for cell state targeting'