Find why PyTorch training is slow while it’s still running

The most atomic way to train and run inference for a GPT in 100 lines of pure, dependency-free Julia.

Web app for interacting with Google DeepMind's AlphaGenome model — interval predictions, variant effect analysis, and visualization

The multivariate MArginal ePIstasis Test

A fast and scalable method to detect epistasis in complex traits from biobank-scale studies

Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)

Research code accompanying AlphaGenome

Official code repo for the O'Reilly Book - "Hands-On Large Language Models"

Community extensions for TabPFN - the foundation model for tabular data. Built with TabPFN! 🤗

⚡ TabPFN: Foundation Model for Tabular Data ⚡

Cell2Sentence: Teaching Large Language Models the Language of Biology

Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks

scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics

A curated, comprehensive collection of open-source AI tools, frameworks, datasets, courses, and seminal papers.

Autoencoders for genomic data compression, classification, imputation, phasing and simulation.

Genome modeling and design across all domains of life

Code associated with "ORC-Omics (ORCO): Ollivier-Ricci curvature for unsupervised omic network analysis"

ProCyon: A multimodal foundation model for protein phenotypes

NetCIS: Network-based Common Insertion Site analysis

BridGE: a pathway-based analysis tool for detecting genetic interactions from GWAS

A fast, precise, pure Python implementation of Fisher's exact test

upload big files to Zenodo using cURL, jq and bash

Application for making ENCODE Blacklists

A curated list of awesome places to learn and/or practice algorithms.

Codebase for information theoretic shapley values to explain predictive uncertainty.This repo contains the code related to the paperWatson, D., O'Hara, J., Tax, N., Mudd, R., & Guy, I. (2023). Expl…

AlphaFold 3 inference pipeline.