litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexible and elegant API for interacting with Large Language Models…

NLM .nxml to text format conversion

library supporting NLP and CV research on scientific papers

Copy of huridocs PDF extraction library

Fork of chat-langchain with minimal edits for reuse on open-source tools.

Tools for curating biomedical training data for large-scale language modeling

GPT based autonomous agent that does online comprehensive research on any given topic

Developing local LLMs for use within LangChain

A pure-python PDF library capable of splitting, merging, cropping, and transforming the pages of PDF files

An interactive PDF reader.

Build cross-platform desktop apps with JavaScript, HTML, and CSS

Template for nbdev projects

Porting the theme to CZI

Code for finding ontology term matches in Napari plugin descriptions

Open Source Code for Extraction of Methods and Datasets from Biomedical Papers

Boilerplate to start with Docker setup (Next.js included)

Open source text annotation tool for machine learning practitioner.

Jupyter Widget for data annotation

Extracting scientific claims from biomedical abstracts (powered by AllenNLP), demo:

SciGraph docker image and monarch specific configurations

Source to www.draw.io

Research Object describing source code and data for Burns et al (2019)

Dockerfile base designed to provide a sharable, stable set of libraries for data science work. Thanks to the awesome Florian Geigl (@floriangeigl) for making his implementation available.

Simple interaction code to define the BioC as a UIMA type and provide support for it's use in text mining applications based on the CleartTk UIMA system.