Tensors and Dynamic neural networks in Python with strong GPU acceleration

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

An implementation of chunked, compressed, N-dimensional arrays for Python.

Morphological snakes for image segmentation and tracking

A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.

Python module for registering and fusing multi-view microscopy data

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

Deploy Dask on job schedulers like PBS, SLURM, and SGE

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

Python module utilizing libCZI for reading Zeiss CZI files.

A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

Tools for distributed alignment of massive images