Bulk RNA-seq Cell Type Proportion Deconvolution

Step-by-step analysis pipeline for RNA-seq data

RNA-seq quantification pipeline used by the eQTL Catalogue

Distrod is a meta-distro for WSL 2 which installs Ubuntu, Arch, Debian, Gentoo, etc. with systemd in a minute for you. Distrod also has built-in auto-start feature on Windows startup and port forwa…

Canvas - Copy number variant (CNV) calling from DNA sequencing data

Support Vector Structural Variation Genotyper

The Rust Programming Language: Experimental Edition

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Population-scale genotyping using pangenome graphs

Bioinformatics Workbook repository

🔬 Path to a free self-taught education in Bioinformatics!

Useful bash one-liners for bioinformatics.

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

Variant annotation and merging pipeline

A basic introduction to coding in modern C++.

Fast and accurate gene fusion detection from RNA-Seq data

Chrome extension for helping nonresident alien fill in the 1099-B stock transaction

Collaborative Collection of C++ Best Practices. This online resource is part of Jason Turner's collection of C++ Best Practices resources. See README.md for more information.

1000+ DevOps Bash Scripts - AWS, GCP, Kubernetes, Docker, CI/CD, APIs, SQL, PostgreSQL, MySQL, Hive, Impala, Kafka, Hadoop, Jenkins, GitHub, GitLab, BitBucket, Azure DevOps, TeamCity, Spotify, MP3,…

High Precision Timing of R Expressions

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

RNAseq analysis notes from Ming Tang

A single file C++ header-only PEG (Parsing Expression Grammars) library

Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)

Docker images for R

A SingleCell RNASeq pre-processing snakemake workflow

GeDi: Generative Discriminator Guided Sequence Generation