Official code repository for GATK versions 4 and up

📜 🎉 Automated reporting of objects in R

Bioconductor facilities for parallel evaluation

An Efficient RML-Compliant Engine for Knowledge Graph Construction

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Effect size measures and significance tests

Contribute Packages to Bioconductor

my notes for scATACseq analysis

Rmd source files for the HarvardX series PH525x

Predictive kmer models for development use

Course material for introductory R / Bioconductor courses

Training material for intermediate R / Bioconductor courses

[DEPRECATED] Docker containers for Bioconductor

Training material for introductory R / Bioconductor courses

Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3

Materials for the RStudio joint webinar with Appsilon Data Science 'Enabling Your Distributed Data Science Team'

[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.

This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflo…

Mycobacterium tuberculosis next generation sequence analysis

IDEEL pipelines for next-generation sequence quality control and analysis

Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data

Next-generation PRALINE sequence alignment program.

Estimating time of HIV-1 infection from next-generation sequence diversity (code and data)

A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.