Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.

RNA-seq prediction with deep convolutional neural networks.

fMRI-CPCA command line version

Image-Based Meta-analysis on Z-statistics

Arch Linux Package for Mainline Linux with AMD G1A Patches

Rust crates to work with the Conda ecosystem.

Scraping of Pre and Post trade data for the purpose of comparing execution prices from PFOF (Payment for Order Flow) and non-PFOF exchanges.

For learning and testing various hugging face stuff with BrainLM

Python library for managing cgroups

PLASMA is a software package for solving problems in dense linear algebra using OpenMP

Software program for generating synthetic datasets for genotypes and phenotypes

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

Manager for the quality assessment of large neuroimaging studies

Quality control steps for GWAS -- Internal Use

Minimal JAX implementation of k-nearest neighbors using a k-d tree.

Benchmark denoising strategies available from fmriprep.

Train VAE like a boss

Self-Supervised Vision Transformers for multiplexed imaging datasets

A PyTorch implementation of the paper "All are Worth Words: A ViT Backbone for Diffusion Models".

🤗 Diffusers: State-of-the-art diffusion models for image, video, and audio generation in PyTorch.

Fast and accurate heritability stratification using summary statistics and sparse LD representations based on graphical models.

High-definition likelihood inference of genetic correlations (HDL)

corrplot of LDSC genetic correlation results

Portward is an all-in-one registry authorization service

Rare variant test software for next generation sequencing data

Zotero platform organized for selfhosting

Typing Stubs for SciPy