Full Changelog: 1.2.0...1.2.1

Hotfix for installation of scripts (ntsmSiteGen) to prefix via make install

Full Changelog: 1.1.0...1.2.0

Full Changelog: 1.0.2...1.1.0

Major changes:

• generatesites makefile script changed to ntsmSiteGen with k-mer duplicate checking for more robust site generation.

Full Changelog: 1.0.1...1.0.2
Major bugfixes in:

• ntsmCount - k-mer count init bug and early termination bug fix on some systems
• filterRepetiveSNP.pl - Variant ID parsing bug fix

• Provide scripts and information for generating sites and PCA rotation matrix for PCA-based heuristic
• Minor fixes and changes to PCA heuristic code

Scoring method using faster loglikelihood scoring that is more resilient to missing sites. Other features: Error rate estimation and relatedness metrics.

Update hash function to use an invertible hash function to prevent collisions
Change default score parameter (-s)

Initial Release