Estimating k-mer coverage histogram of genomics data

This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to compute the probability that sample are of the same origin to di…

Symmetric DUST for finding low-complexity regions in DNA sequences

🌺 reference-free transcriptome assembly for short and long reads

Fast hash function for DNA/RNA sequences

Tools for analyzing 10X Genomics data

A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.

Converts profiling output to a dot graph.

Succinct Data Structure Library 2.0

The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.

Simulating the performance of various streaming algorithms. #experimentalmathematics

Create Bloom filters for a given reference and then use it to categorize sequences

Whole Genome Simulator for Next-Generation Sequencing

🔬 Assemble large genomes using short reads