The MolEvolvR R-package provides a framework for characterizing proteins using molecular evolution and phylogeny. Check out our pkgdown page here: jravilab.github.io/MolEvolvR
You can install the development version of MolEvolvR from GitHub with:
# Install Bioconductor
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install(version = "3.19")
# Install Development Version of MolEvolvR
BiocManager::install("JRaviLab/MolEvolvR")library(MolEvolvR)This is a basic example which shows you how to analyze your favorite protein:
library(MolEvolvR)
## basic example code
## ⏳ Stay tuned!- MolEvolvR web-app 1.0 | 🔒Repo | Live web-app | Preprint | Case studies
- MolEvolvR web-app 2.0 | 🔒Repo
- PSP evolution across the tree of life | 🔒Repo | Live web-app | PubMed
- Bacterial phage defense system, avcDI | Repo | PubMed
- DciA evolution across bacteria | Repo | PubMed
- Internalins in Listeria | Repo | PubMed
- David Mayer | R-package, back-end
- Faisal Alquaddoomi | Front-end 1.0, back-end
- Evan Brenner | MolEvolvR functionality
- Vince Rubinetti | Front-end 2.0
- Dave Bunten | Data management, engineering
- Janani Ravi | PI
We welcome contributions from the community! To ensure a smooth and collaborative process, please follow these guidelines. Outreachy interns, please check out these pointers to get started.
📜 License
Please note that the MolEvolvR project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.