Lists (6)
Stars
A method to joint-call RNA isoforms across many IsoSeq samples
🚀 A structured data pipeline project using dbt and Snowflake to transform raw data into curated datasets. This project covers data ingestion, cleansing, enrichment, Slowly Changing Dimensions (SCD …
Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Drosophila melanogaster S2 cells
MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
This repository contain most updated shape file (.shp) of India country boundary and Indian State and UT boundary. The India Boundary Shape File represents the boundary of the Republic of India as …
A playbook for systematically maximizing the performance of deep learning models.
Framework for orchestrating role-playing, autonomous AI agents. By fostering collaborative intelligence, CrewAI empowers agents to work together seamlessly, tackling complex tasks.
Summaries and resources for Designing Machine Learning Systems book (Chip Huyen, O'Reilly 2022)
Final project mentored by Prof. Sambit Sahu and Yuan Zhao for COMSE6998_013 Cloud Computing and Big Data in Fall 2021
Vowpal Wabbit is a machine learning system which pushes the frontier of machine learning with techniques such as online, hashing, allreduce, reductions, learning2search, active, and interactive lea…
Scripts associated to transcriptome-wide analysis of the effects of systematic knock down of splicing factors and regulators using siRNAs in HeLa cells
python module to plot beautiful and highly customizable genome browser tracks
Fabric for Deep Learning (FfDL, pronounced fiddle) is a Deep Learning Platform offering TensorFlow, Caffe, PyTorch etc. as a Service on Kubernetes
The most powerful and modular diffusion model GUI, api and backend with a graph/nodes interface.
Uncertainty quantification with PyTorch
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python with AI-powered optimization proposals
ou-generativeai-pro
Network Reverse Engineering through AP inference of Mutual Information