A proof of concept daisy-chaining Nextflow workflows

Structural variant calling tutorial using long-reads.

💫 Toolkit to help you get started with Spec-Driven Development

DataTables but in TypeScript transpiled to Vanilla JS

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

resources for learning bioinformatics

A genome browser designed for complex structural variants and long reads.

Command line client for Trello

Tools to process and analyze deep sequencing data.

The D4 Quantitative Data Format

Embeddable genomic visualization component based on the Integrative Genomics Viewer

Exploratory Web Apps for Analyzing Clinical Trial Data

Continuous saving of tmux environment. Automatic restore when tmux is started. Automatic tmux start when computer is turned on.

Generate Panel of Normals, models or other similar references from lots of samples

Unsorted scripts for bioinformatics

A DSL for data-driven computational pipelines

A tool for getting consensus of SVs.

Toolset for SV simulation, comparison and filtering

R package to organise and standardise your genomic variant calls obtained with different callers.

The nimble & robust variant annotator

Plot structural variant signals from many BAMs and CRAMs

basic tmux settings everyone can agree on

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

A terminal for a more modern age

This repo generates automatic documentation for pipelines or tools by using a pipeline.yaml file and producing both HTML and MD documents. The MD document can be uploaded to a readthedocs server fo…