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astar-pairwise-aligner Public
Forked from RagnarGrootKoerkamp/astar-pairwise-alignerA pairwise sequence aligner written in Rust
Rust Mozilla Public License 2.0 UpdatedOct 23, 2025 -
Motifs Public
A repo containing all relevant code, documentation, and assets used in posts for the substack, Motifs.
MIT License UpdatedApr 15, 2025 -
py_cli_template Public template
A template repo for quickly building click applications in python
Python UpdatedApr 10, 2025 -
rust-bio Public
Forked from rust-bio/rust-bioThis library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Rust MIT License UpdatedMar 4, 2025 -
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hyena-dna Public
Forked from HazyResearch/hyena-dnaOfficial implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
Assembly Apache License 2.0 UpdatedMay 15, 2024 -
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TSAapp Public
Tool for parsing QS3 instrument data into a reasonable matrix and webserver code
R GNU General Public License v3.0 UpdatedFeb 25, 2023 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedJun 1, 2022 -
Science_scripts Public
Various shell/python/R scripts I've written over the course of my PhD for various reasons
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variant-calling-pipeline-gatk4 Public
Forked from gencorefacility/variant-calling-pipeline-gatk4Variant Calling Pipeline Using GATK4 and Nextflow
Nextflow UpdatedMay 28, 2021 -
mmtf-hackathon-2018 Public
Forked from sbl-sdsc/mmtf-hackathon-2018Hackathon projects repository for MMTF Workshop 2018
Jupyter Notebook Apache License 2.0 UpdatedMay 9, 2018 -
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3030_Haribo_Edition Public
Forked from PrusaMK2Users/3030_Haribo_EditionAluminum extrusion conversion for the Original Prusa i3 MK2
OpenSCAD Other UpdatedJan 26, 2018 -
mmtf-fragment-search Public
Forked from lafita/mmtf-fragment-searchSearch similar fragments across the PDB using MMTF
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mmtf-spark Public
Forked from sbl-sdsc/mmtf-sparkMethods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Java UpdatedAug 3, 2017 -
mmtf-workshop-2017 Public
Forked from sbl-sdsc/mmtf-workshop-2017Structural Bioinformatics Training Workshop & Hackathon 2017
HTML Apache License 2.0 UpdatedJun 27, 2017 -
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noobomics Public
A very quick and unsophisticated approach to exploring RNAseq and Proteomic data to distill out hypothesis-driven candidates.
R MIT License UpdatedDec 21, 2015 -
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