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Starred repositories

11 stars written in Jupyter Notebook
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Implement a ChatGPT-like LLM in PyTorch from scratch, step by step

Jupyter Notebook 78,002 11,518 Updated Nov 6, 2025

Repository for suggesting new lineages that should be added to the current scheme

Jupyter Notebook 1,067 104 Updated Nov 4, 2025

TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data

Jupyter Notebook 923 217 Updated Nov 6, 2025

Deep learning for molecules and materials book

Jupyter Notebook 677 129 Updated Oct 13, 2025

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

Jupyter Notebook 272 70 Updated Oct 30, 2023

A Knowledge Graph of Common Chemical Names to their Molecular Definition

Jupyter Notebook 170 21 Updated Jan 24, 2025

Pyro models of SARS-CoV-2 variants

Jupyter Notebook 77 30 Updated Jul 26, 2024

code for SeqDance/ESMDance, biophysics-informed protein language models

Jupyter Notebook 41 5 Updated Apr 2, 2025

🥳emojis in chemistry⚗️🥳

Jupyter Notebook 25 2 Updated Dec 16, 2022

Molecules

Jupyter Notebook 7 3 Updated Mar 19, 2022
Jupyter Notebook 4 1 Updated Jan 12, 2022