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VIP cheatsheet for Stanford's CME 295 Transformers and Large Language Models
Implement a ChatGPT-like LLM in PyTorch from scratch, step by step
MOLEonline is a fast service for calculating tunnels and pores in biomacromolecular structures
A repository to describe the RS quality indicators used in the EVERSE project
The Ultimate Toroidal Propeller Generator is an open source project that provides a way to generate STL files of toroidal drone propellers.
This OpenSCAD library was created to make it easy to create board game inserts with lids for either horizontal or vertical storage, without any programming required.
Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
code for SeqDance/ESMDance, biophysics-informed protein language models
PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
Computational chemistry benchmark data sets for non-covalent interactions
Generate nice icons of molecules with a python script
Natural language computational chemistry command line interface.
Robust representation of semantically constrained graphs, in particular for molecules in chemistry
Tools to scrape publications & their metadata from pubmed, arxiv, medrxiv, biorxiv and chemrxiv.
A Knowledge Graph of Common Chemical Names to their Molecular Definition
Deep learning for molecules and materials book
a library for massive analyses of internal voids in biomolecules and ligand transport through them
A web platform to detect and analyze variants of SARS-CoV-2
Repository for suggesting new lineages that should be added to the current scheme
Software package for assigning SARS-CoV-2 genome sequences to global lineages.