A toolkit of spatial transcriptomic analysis.

A cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding

Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

Dinoflagellate Annotation Workflow

R toolkit for single cell genomics