Feynman-Kac steering for controllable protein diffusion

Muon is an optimizer for hidden layers in neural networks

Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

Official repository for the Boltz biomolecular interaction models

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Foldseek enables fast and sensitive comparisons of large structure sets.

Making Protein folding accessible to all!

Implementation of Diffusion Transformer (DiT) in JAX

Code for ICLR 2023 Paper, "Stable Target Field for Reduced Variance Score Estimation in Diffusion Models”

AlphaFold 3 inference pipeline.

Toward High-Accuracy Open-Source Biomolecular Structure Prediction.

Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

List of papers about Proteins Design using Deep Learning

Making Protein Design accessible to all via Google Colab!

Protein hallucination and inpainting with RoseTTAFold

flexible CDR based distance metrics

Multi-Objective Molecule Generation using Interpretable Substructures (ICML 2020)