Python implementation of bulk RNAseq deconvolution algorithms

GrAIdient is a deep learning framework that aims at challenging the way we train and run models.

A pytorch library for graph and hypergraph computation.

Website of the French painter Alain Fidon.

Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

Fast and modular sklearn replacement for generalized linear models

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Trustworthy AI method based on Dempster-Shafer theory - application to fetal brain 3D T2w MRI segmentation

A playbook for systematically maximizing the performance of deep learning models.

A high-level federated learning Python library used to run complex federated learning experiments at scale on a Substra network

Low-level Python library used to interact with a Substra network

Simple video summarisation Python package.

List of how-to tutorials, mostly for Debian/Ubuntu/Linux related stuff.

Semantic Self-adaptation: Enhancing Generalization with a Single Sample (TMLR 2023)

A tool for the automatic segmentation of fetal brain 3D T2-weighted MRI

Official PyTorch implementation of "Distributionally Robust Deep Learning using Hardness Weighted Sampling"

blob loss example implementation

🚀 A simple way to launch, train, and use PyTorch models on almost any device and distributed configuration, automatic mixed precision (including fp8), and easy-to-configure FSDP and DeepSpeed support

LGI: Cortical Shape-Adaptive Local Gyrification Index

Library to compute surface distance based performance metrics for segmentation tasks.

a set of age-specific Chinese fetal atlases between 21-35 weeks of gestation

Our deep learning training pipeline for the BraTS 2021 challenge and the FeTA 2021 challenge

A thesis template compliant with King's College London and UCL rules

Label-set loss functions for partial supervision in image segmentation

List of surgical tool datasets organised by task.

Python script to launch a container with X11 graphics support.

https://trabit-network.github.io/conference/

Official implementation of the Generalized Wasserstein Dice Loss in PyTorch

AI Toolkit for Healthcare Imaging

Web app to annotate images for surgical tooltip localisation.