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Jupyter-SQLAlchemy-Tutorial Public
Introductory interactive Jupyter tutorial providing details about ORMs in order to assist in the teaching of their use to computing science students.
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BackBLAST_Reciprocal_BLAST Public
This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolkit for finding and visualizing BLAST hits for gene clusters …
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BioID Public
A Python package for autonomously identifying Bioinformatic file formats.
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FragGeneScanPlusPlus Public
Forked from unipept/FragGeneScanPlusPlusScalable high-throughput short-read open reading frame prediction
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Homebrew formula for FragGeneScanPlusPlus
Ruby MIT License UpdatedFeb 19, 2020 -
homebrew-bio Public
Forked from brewsci/homebrew-bio🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
Ruby Other UpdatedFeb 18, 2020 -
Phylogenetic-Tree-Building Public
A tool kit for extracting 16S rRNA genes from genomes for the purpose of building phylogenetic trees.
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gc_size_select Public
Visualization of genomic sequencing size selection protocol's influence on per fragment GC content.
Jupyter Notebook MIT License UpdatedJun 8, 2018 -
stevelyall.github.io Public
Forked from stevelyall/stevelyall.github.ioJavaScript UpdatedApr 18, 2018 -
atlas-wrapper Public
Forked from jmtsuji/atlas-wrapperA wrapper to run ATLAS within a Docker container
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MESaS Public
Forked from neufeld/MESaSMicrobial Ecology Scripts and Stuff
R MIT License UpdatedAug 10, 2017 -
BLAST-Mapper Public
An iPython notebook containing code for plotting BLAST hit position across multiple genomes using the Bokeh plotting library.
Jupyter Notebook Apache License 2.0 UpdatedJul 7, 2017 -
Genbank-Downloaders Public
A series of small Biopython scripts for downloading sequence data off NCBI's Genbank.
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watson-image-classifier Public
Forked from chadfawcett/watson-image-classifierImage classifier using IBM Watson
JavaScript UpdatedFeb 24, 2017 -
Shovel Public
Tools for working with the SPAdes Genome Assembler
Python MIT License UpdatedJul 28, 2016 -
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BioMagick Public
A next generation bioinformatics file format converter.
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HMMER-DB Public
A program for searching, extracting and storing protein sequences that match specific Hidden Markov Models created by HMMER.
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CDHITtoFASTA Public
Extracts CD-Hit clusters which contain reference proteins and stores them in FASTA format.
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Torrent_Variant_Caller Public
Mirror of Ion Torrent's Ion Semiconductor Sequencing Variant Calling Software
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diamond Public
Forked from bbuchfink/diamondAccelerated BLAST compatible local sequence aligner.
C UpdatedJun 3, 2015 -
homebrew-science Public
Forked from ahmadia/homebrew-science🔬 Scientific formulae for the Homebrew package manager
Ruby UpdatedJun 2, 2015 -
Bioinformatics_scripts Public
Forked from carden24/Bioinformatics_scriptsScripts UBC
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TRU_ACM_ICPC Public
Thompson River University ACM International Collegiate Programming Contest Practice
Java MIT License UpdatedOct 22, 2014
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