SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following publication By Sanborn MA et al in Nature Communications (2025…

Distance-based Analysis of DAta-manifolds in python

Software for generating a brain-predicted age value, using Gaussian Processes regression, implemented in R

2023: Preserved neural dynamics across animals performing similar behaviour

An eXplainable AI toolkit with Concept Relevance Propagation and Relevance Maximization

REACT: Receptor-Enriched Analysis of functional Connectivity by Targets

Python tutorial for estimating and clustering free energy landscapes with InfleCS.

BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

Real numbers, data science and chaos: How to fit any dataset with a single parameter

Multiple Pairwise Comparisons (Post Hoc) Tests in Python

Library for detecting and visualizing community structure in graphs

Harmonization of multi-site imaging data with ComBat

🍪 Clustering stability analysis in Python with a scikit-learn compatible API.

Keras implementation of "SimGNN: A Neural Network Approach to Fast Graph Similarity Computation". Includes synthetic GED data.

This curated list contains python packages for time series analysis

🔴 MiniSom is a minimalistic implementation of the Self Organizing Maps

Keras Temporal Convolutional Network.

Contains an implementation (sklearn API) of the algorithm proposed in "GENDIS: GEnetic DIscovery of Shapelets" and code to reproduce all experiments.

Repository containing notebooks of my posts on Medium

Various programs for processing and displaying coactivation patterns in fMRI data

Utilities for brain atlas related tasks

Keras implementation of the Deep Temporal Clustering (DTC) model

A dynamic connectome mapping module in python.

Graph Neural Networks with Keras and Tensorflow.