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dwidenoise2 Public
Updated implementation of MP-PCA denoising using the MRtrix3 API
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VendorScheme Public
Generates diffusion MRI gradient table schemes compatible with scanner vendors
Python Mozilla Public License 2.0 UpdatedApr 22, 2026 -
clang-tidy-review Public
Forked from ZedThree/clang-tidy-reviewCreate a pull request review based on clang-tidy warnings
Python MIT License UpdatedFeb 25, 2026 -
IP-freely Public
Free manipulation of BIDS datasets according to the Inheritance Principle
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DWI_metadata Public
A software tool for verifying appropriate software handling of DWI metadata
Python Mozilla Public License 2.0 UpdatedNov 18, 2025 -
mrtrix3 Public
Forked from MRtrix3/mrtrix3MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and appar…
C++ Mozilla Public License 2.0 UpdatedSep 24, 2025 -
conndensnorm_resection Public
Reproduction of experiment for article "Longitudinal quantification of Fibre Bundle Capacity addresses structural connectivity biases in surgical resection cohorts"
Shell Creative Commons Zero v1.0 Universal UpdatedSep 12, 2025 -
bids-examples Public
Forked from bids-standard/bids-examplesA set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
MATLAB UpdatedJul 10, 2025 -
neurodesk.github.io Public
Forked from neurodesk/neurodesk.github.ioSCSS Apache License 2.0 UpdatedOct 7, 2024 -
neurocontainers Public
Forked from neurodesk/neurocontainersThe containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines
Shell MIT License UpdatedSep 23, 2024 -
bids-specification Public
Forked from bids-standard/bids-specificationBrain Imaging Data Structure (BIDS) Specification
Python Creative Commons Attribution 4.0 International UpdatedSep 3, 2024 -
bids2dicom Public
Creation of DICOM dataset from a set of BIDS raw / derivatives
Python Apache License 2.0 UpdatedMay 3, 2024 -
fmriprep Public
Forked from nipreps/fmriprepfMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
HTML Apache License 2.0 UpdatedApr 25, 2023 -
python-ismrmrd-server Public
Forked from kspaceKelvin/python-ismrmrd-serverExample client/server example for the streaming ISMRM Raw Data protocol
Python UpdatedNov 25, 2022 -
dicom-mr-classifier Public
Forked from flywheel-apps/dicom-mr-classifierPython UpdatedMar 24, 2022 -
bids-website Public
Forked from bids-standard/bids-websiteWebsite for the Brain Imaging Data Structure standard.
SCSS Creative Commons Attribution 4.0 International UpdatedFeb 6, 2022 -
Zalesky2020b Public
Data, code and images clarifying the operation of the SIFT and SIFT2 methods on the examples presented in the publication: Zalesky et al. "SIFT in pathological connectomes: Follow-up response to Sm…
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Zalesky2020 Public
Data and script for demonstrating the operation of the SIFT and SIFT2 algorithms on the phantom structure presented in: Zalesky et al., "A cautionary note on the use of SIFT in pathological connect…
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Sarwar2019 Public
Data and script for demonstrating the operation of the SIFT and SIFT2 algorithms on the phantom structure presented in: Sarwar et al., "Mapping connectomes with diffusion MRI: deterministic or prob…
Shell UpdatedAug 13, 2020 -
hackathon2020 Public
Forked from ohbm/hackathon2020Website for the 2020 OHBM Hackathon (Location: 3rd planet from the Sun)
HTML MIT License UpdatedJun 14, 2020 -
bep001 Public
Forked from bids-standard/bep001Project management repository (primarily issues) for BIDS Extension Proposal 001
Creative Commons Attribution 4.0 International UpdatedSep 4, 2019 -
PhDtemplate Public
A LaTeX template I generated from my PhD thesis, with instructions and worked examples.
TeX UpdatedJun 24, 2019 -
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