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ExperimentHub collection of imaging mass cytometry datasets

R 12 4 Updated Jan 9, 2026

A general repository for an -omics hackathon being held in Venice!

9 2 Updated Apr 10, 2026

Longitudinal Bioc build database

R 2 4 Updated Feb 17, 2026

Support and bug tracker for R-universe

11 3 Updated Oct 24, 2024

Documentation relating to the new build system and GitHub hosted repositories

2 Updated Aug 20, 2025

Open-source data framework for biology. Context and memory for datasets and models at scale. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & ontologi…

Python 240 24 Updated Apr 12, 2026

Materials for PUBH614: Quantitative and Qualitative Data Analysis Methods in Public Health Research

JavaScript 3 3 Updated Feb 20, 2026

Quarto extension for INRAE Templates

CSS 35 4 Updated Sep 8, 2025

Matrix-like representations of mutation and CN data

R 5 4 Updated Nov 17, 2025

GitHub Actions for developing and maintaining Bioconductor packages

R 13 3 Updated Nov 13, 2025

R package to work with AnVIL data models

R 2 Updated Mar 6, 2026

Toolbox package for organizing and working with TCGA data

R 28 7 Updated Mar 26, 2026

A template to create CVs/Resumes with Quarto

TeX 47 21 Updated Oct 28, 2024

Minimalist Async Evaluation Framework for R

R 312 19 Updated Apr 11, 2026
R 1 Updated May 20, 2025

This is a repository for the LinkedIn Learning course Learning Kubernetes

117 209 Updated Feb 21, 2025

Chat UI component for Shiny

TypeScript 127 23 Updated Apr 10, 2026

scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images

Python 107 7 Updated Apr 7, 2026

Lightweight approach to managing Xenium experiments

R 1 Updated Nov 27, 2024

Probabilistic cell segmentation for in situ spatial transcriptomics

Rust 166 16 Updated Mar 13, 2026

An extremely fast Python package and project manager, written in Rust.

Rust 83,130 2,934 Updated Apr 12, 2026

Powerful system-level package manager for Linux, macOS and Windows written in Rust – building on top of the Conda ecosystem.

Rust 6,813 481 Updated Apr 10, 2026

rapids-singlecell: GPU-accelerated framework for scRNA analysis

Python 353 44 Updated Apr 10, 2026
Jupyter Notebook 13 7 Updated Dec 20, 2025
Python 92 55 Updated Apr 6, 2026
Python 13 5 Updated Jun 15, 2024
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