Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

A Rust compiler front-end for IDEs

Single-cell perturbation analysis

Trajectory Inference of clinical data via Multi-commodity Flow

Generates a KiCAD schematic and PCB layout using a Keyboard Layout Editor json file as input

Practical Cheminformatics Tutorials

Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R

Test for a molecular clock based on the phylogenetic tree inferred from single-cell DNA sequenzing data

A tool to identify strand asymmetries in genomic data

A Toolbox for Spatial Transcriptomics Analysis

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

Single-cell Case Control Analysis

Spatial Cellular Estimator for Tumors

R package for pathway analysis in scRNA-seq data

Functional Inference of Gene Regulation

trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.

R package for semi-supervised single-cell data integration

muon is a multimodal omics Python framework

Benchmarking analysis of data integration tools

MARIO: single-cell proteomic data matching and integration using both shared and distinct features

Scissor package

Clustering scRNAseq by genotypes

A checklist to help you avoid all those minor errors when submitting a scientific manuscript

Use an ensemble of variant callers to call variants from ATAC-seq data

R package implementation of Milo for testing for differential abundance in KNN graphs

Workshop for CNV analysis with Bioconductor

deconstructSigs