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@PavlidisLab

Pavlidis lab

The Pavlidis Lab at the University of British Columbia

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  1. neuroexpresso neuroexpresso Public

    📊 Gene expression in neuroexpresso database

    R 18 1

  2. Gemma Gemma Public

    Genomics data re-analysis

    Java 23 6

  3. markerGeneProfile markerGeneProfile Public

    Marker gene profile estimation method used in NeuroExpresso manuscript

    R 14 2

Repositories

Showing 10 of 64 repositories
  • baseCode Public

    Data structures, math and statistics tools, and utilities that are often needed across projects.

    PavlidisLab/baseCode’s past year of commit activity
    Java 5 Apache-2.0 0 3 2 Updated Feb 28, 2025
  • Gemma Public

    Genomics data re-analysis

    PavlidisLab/Gemma’s past year of commit activity
    Java 23 Apache-2.0 6 322 30 Updated Feb 28, 2025
  • pavlab-starter-parent Public

    Curated dependencies for the Pavlidis Lab's Java applications

    PavlidisLab/pavlab-starter-parent’s past year of commit activity
    0 Apache-2.0 0 7 1 Updated Feb 28, 2025
  • owlviz Public Forked from protegeproject/owlviz

    A Protégé Desktop plugin that provides a graphical representation of the class hierarchy in an OWL ontology.

    PavlidisLab/owlviz’s past year of commit activity
    Java 0 12 0 0 Updated Feb 24, 2025
  • sc-annotation-pipeline Public
    PavlidisLab/sc-annotation-pipeline’s past year of commit activity
    Python 0 0 0 1 Updated Feb 19, 2025
  • ermineR Public

    R wrapper for ermineJ

    PavlidisLab/ermineR’s past year of commit activity
    R 6 4 3 0 Updated Feb 14, 2025
  • ermineJ Public

    Analysis of enrichment of gene sets with a GUI and CLI

    PavlidisLab/ermineJ’s past year of commit activity
    Java 0 Apache-2.0 0 2 0 Updated Feb 13, 2025
  • gemmapy Public
    PavlidisLab/gemmapy’s past year of commit activity
    Python 6 Apache-2.0 1 8 2 Updated Feb 6, 2025
  • TGEMO Public

    The Gemma Ontology

    PavlidisLab/TGEMO’s past year of commit activity
    Python 1 1 3 1 Updated Feb 3, 2025
  • TR_singlecell Public
    PavlidisLab/TR_singlecell’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 28, 2025
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