Structural variant toolkit for VCFs

python Circos

Assemblies from HPP Year 1 production

MSIRNA: Microsatellite instability detection using RNA sequencing data

Microsatellite Instability (MSI) detection using high-throughput sequencing data.

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It u…

microsatellite instability detection using tumor only or paired tumor-normal data

Instructions of HPC at Ye-lab

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Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.

Smith-Waterman local aligner

Detect novel (and reference) STR expansions from short-read data