Stars
A JupyterLab extension for displaying dashboards of GPU usage.
A workflow for creating and editing publication ready scientific reports and presentations, from one or more Jupyter Notebooks, without leaving the browser!
ScaffoldGraph is an open-source cheminformatics library, built using RDKit and NetworkX, for the generation and analysis of scaffold networks and scaffold trees.
Analysis of the effect of sequence padding on the performance of a hierarchical EC number prediction task.
A Python Package to Tackle the Curse of Imbalanced Datasets in Machine Learning
Infer selection pressures on features of amino acid CDR3 sequences.
Public version of BioNAS, a Neural Architecture Search method for interpretable Bioinformatics applications
Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
Hyperparameter-Optimization-Tutorial
Collection of jupyter notebooks for demonstrating software.
Gaussian Process Optimization using GPy
A global, black box optimization engine for real world metric optimization.
Sequential model-based optimization with a `scipy.optimize` interface
Spearmint is a package to perform Bayesian optimization according to the algorithms outlined in the paper: Practical Bayesian Optimization of Machine Learning Algorithms. Jasper Snoek, Hugo Laroche…
Distributed Asynchronous Hyperparameter Optimization in Python
🧰 Multi-user development platform for machine learning teams. Simple to setup within minutes.
🛠 All-in-one web-based IDE specialized for machine learning and data science.
Models and examples built with TensorFlow
Evaluation of the CNN design choices performance on ImageNet-2012.
Keras Attention Layer (Luong and Bahdanau scores).
Quantifying the nativeness of antibody sequences using long short-term memory networks
K3D lets you create 3D plots backed by WebGL with high-level API (surfaces, isosurfaces, voxels, mesh, cloud points, vtk objects, volume renderer, colormaps, etc). The primary aim of K3D-jupyter is…
Neural network graphs and training metrics for PyTorch, Tensorflow, and Keras.
An example for generating a report with ipypublish (nbpublish command)