Commits

Commits on Jun 10, 2026

Backfill live Zenodo DOI (10.5281/zenodo.20626910); add recovered breadth_300 bundle to deposit info

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7d01d0b
manifest: add 600 breadth_300 AF3 artifacts (recovered from Euler)

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80b40c7
Table 6: flag terminal hydroxamic acid (12/19) + d123 gem-amino-fluoride

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827af61
README: use the two-panel Fig 1 (a: loop, b: bioisostere DMS library) from the manuscript; update caption
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d824135
README showcase: Fig 1 (loop) up top + 'Designed molecules' section (Fig 3 wall, Fig 7 gallery, Table 4 + Table 6 per-molecule); add table docx to supplementary/

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4d6fa37
Zenodo README: correct manifest row count to 10,656
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5c72d22
Zenodo: deposit surviving structures only (10,656 files / 3.58 GB)

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04642ae
Stage Zenodo deposit + add reproducing notes

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660c9a7
Reproducibility + privacy: replace hardcoded local/worktree paths with repo-relative, reconcile af3_300 location, add 5 missing claim-source TSVs

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ffeef26
Scrub audit internal scaffolding: remove PRESERVATION_DISCIPLINE, rewrite AUDIT_SPEC to clean methodology (drop stale pre-completion claim-skeleton + dangling refs), neutralize leadership refs, ali…

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cc10fe6
Scrub collaborator name from process notes/comments (public release)
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3c44482
Add breadth claim-source TSVs (af3_300 results), remove internal dispatch brief

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97efd29
Scrub internal content for public release: remove leadership/handoff/vendor docs, neutralize BIIE/LMIC naming, trim preliminary audit runs

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ec36a0f

Commits on Jun 9, 2026

Build GenLoop release repo to dtSFM-P1 quality

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c88ed5b

Commits on Jun 3, 2026

Add Designed candidates (HF dataset) link
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6c8757e
Add paper-aligned README
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bdcdaee
Add SFM Research Preview License v1.0-preview
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2ca557e