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Tumoral tissue classifier

Requirements

To run this software you need

  • Node js
  • Python
  • Java maven (build)
  • Java jdk
  • Spark

Getting data from tgca

cd downloader
npm i 
npm i -g typescript
node ./build/index.js

Prepare data for Spark (LIBSVM)

python adapter.py

Run Spark (LIBSVM)

cd classifier
mvn clean install
spark-submit --driver-memory 32g --class "net.riolabs.TGCAClassifier" .\target\TGCAClassifier-1.0.0.jar

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