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hypo Public
Forked from kensung-lab/hypoHyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
C++ GNU General Public License v3.0 UpdatedFeb 23, 2020 -
suk Public
SUK: Solid (Unique) Kmers Computing module
C++ GNU General Public License v3.0 UpdatedFeb 23, 2020 -
slog Public
Simple C++ Logging library (Time and memory usage)
C++ GNU General Public License v3.0 UpdatedDec 20, 2019 -
Superbubbles Public
SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.
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ElDeS Public
*ElDeS* is a tool that finds out occurrences of degenerate patterns in an elastic-degenerate text.
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luf Public
A tool to compute the Longest Unbordered Factor Array in quasi-linear time.
C++ GNU General Public License v3.0 UpdatedJan 6, 2019 -
lpsf Public
Longest Previous/Successor Arrays
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mawcd Public
Codec (compressor-Decompressor) using MAWs (Minimal Absent Words)
C++ GNU General Public License v3.0 UpdatedApr 23, 2018 -
degLPF Public
Computing Longest Previous Factor (LPF) Array in a Degenerate String
C++ GNU General Public License v3.0 UpdatedJan 19, 2018 -
apds Public
APDS is a tool that finds out approximate occurences of a degenerate pattern in a given input sequence. It is based on the algorithm described in the paper titled Linear Algorithm for Conservative …
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clustered_clumps Public
*ClusteredClumps* is a tool that finds out clustered-clumps of - degenerate patterns in a solid text (Problem-1 or Search Type: A) - solid patterns in a degenerate text (Problem-2 or Search Type: B…
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