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lmb-infrastructure Public
A miscellaneous collection of information/scripts to help with managing the computing resources at the LMB which is not covered in other repos.
Shell UpdatedDec 16, 2025 -
Course: Running Bioinformatics Software on a Linux Computer Cluster
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lmb-nextflow Public
Configuration files and other information regarding the Nextflow setup at the LMB
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FastQ-Screen Public
Detecting contamination in NGS data and multi-species analysis
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ParseNIP Public
Pipeline for mapping Parse Evercode datasets with split-pipe
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This course is intended for people who want to learn how to analyse data programmatically
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lmb_pipelines_course Public
A course teaching how to run pre-constructed Nextflow pipelines on the Computer Cluster of the Laboratory of Molecular Biology (LMB), Cambridge, UK
UpdatedMar 13, 2025 -
rsap Public
RNA-seq Analysis Pipeline - takes quantitated data and perform QC, DESeq2 and analysis
Jupyter Notebook GNU General Public License v3.0 UpdatedOct 18, 2024 -
Lava Public
Forked from tempeparsons/Lavazero-interpolation approach to performing pairwise differential abundance analysis on large, multi-condition, multi-replicate proteomics datasets that are spattered with missing values
Jupyter Notebook UpdatedApr 16, 2024 -
HiCUP Public
Hi-C data processing pipeline
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cut_and_run Public
These are collected scripts that constitute a pipeline to analyse Cut and Run / Cut and Tag datasets. The scripts have been taken from the tutorial put together by Ye Zheng, Kami Ahmad and Steven H…
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Structure-Indentity Public
Forked from rosshandler/Structure-IndentityThe project uses snRNAseq and Molecular Cartography to investigate the relation between morphology and molecular identity in brain organoids.
R UpdatedJan 11, 2023 -
A logistic regression workflow that takes RNA-seq data to assess the differentiation potential of a cell line
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nextflow_pipelines Public
Forked from s-andrews/nextflow_pipelinesThe set of NGS processing pipelines used at Babraham
Nextflow GNU General Public License v3.0 UpdatedNov 8, 2021 -
GoldMine Public
Identify the genome of origin of FASTQ sequence reads
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just-the-docs Public
Forked from just-the-docs/just-the-docsA modern, high customizable, responsive Jekyll theme for documention with built-in search.
SCSS MIT License UpdatedSep 15, 2021 -
LifeSciencesTrainingDatasets Public
A collection of datasets and accompanying scripts for learning how to analyse data
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Labrador Public
Forked from ewels/LabradorA web based tool to manage and automate the processing of publicly available datasets.
PHP GNU General Public License v3.0 UpdatedApr 19, 2021 -
WashU-Pipe Public
Pipeline to prepare Hi-C data for the WashU Epigenome Browser
Perl UpdatedJan 25, 2021 -
docker-lamp Public
Forked from mattrayner/docker-lampA simple LAMP image using Ubuntu, Apache, PHP and MySql in a single image
Shell Apache License 2.0 UpdatedNov 23, 2020 -
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compter Public
Forked from s-andrews/compterAn application to graphically summarise kmer enrichment in a set of sequences
Perl GNU General Public License v3.0 UpdatedJun 12, 2020 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedJun 11, 2020 -
SeqMonk Public
Forked from s-andrews/SeqMonkSeqMonk NGS visualisation and analysis tool
Java GNU General Public License v2.0 UpdatedFeb 17, 2020 -
CloseCall Public
Pipeline for processing Proximity RNA-seq datasets
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ConvHicup Public
Scripts to convert HiCUP output for use by other software (e.g. homer)
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