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Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: YOLOAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

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SGMartin/README.md

Hello there! 👋

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This is Santiago's GitHub. I'm a bioinformatician and data scientist with a strong focus on computational pharmacogenomics and personalized precision oncology. I also develop robust NGS pipelines for clinical research.

About me

  • 🇪🇸 - 🇫🇷 Born in Spain, living in France
  • Working as: Bioinformatics engineer@CDB/Gustave Roussy. Previously as bioinformatician@CNIO
  • Education: Degree in medicine, MSc in bioinformatics
  • ORCID: 0000-0002-4540-9446

Tech stack!

General purpose languages

c# DotNET Python Jupyter Notebook Scikit Learn R HTML5 LaTeX MySQL

Workflow managers

snakemake NextFlow

Code, dependency management and reproducibility

Travis CI GitHub GitLab Gitea Git Docker VirtualBox

Pinned Loading

  1. cnio-bu/beyondcell cnio-bu/beyondcell Public

    Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.

    R 54 5

  2. wcps_auth wcps_auth Public

    Authentication server for pywcps

    Python 1

  3. wcps_game wcps_game Public

    Game server for pywcps

    Python 1

  4. wcps_core wcps_core Public

    Core library for wcps

    Python 2