Implementation of Alphafold 3 from Google Deepmind in Pytorch

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

Message Passing Neural Network

This repository contains all the assignments and requirements for the CS61A 2024 Fall course at UC Berkeley. It includes: - Homework files. note: All materials are for educational purposes only. Sh…

Generative Models for Graph-Based Protein Design

Joint sequence and structure generation with RoseTTAFold sequence space diffusion

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Code for running RFdiffusion

Code for the ProteinMPNN paper

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

A fully open source biomolecular structure prediction model based on AlphaFold3