Code repository of "Deep generative design of RNA family sequences"

The GUI for RaptGen developed with React and FastAPI

Pymol Extension for the Visualization of the RNA pseudoknots.

Implementation of Alphafold 3 from Google Deepmind in Pytorch

init commit

ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

21 Lessons, Get Started Building with Generative AI

RiboNucleic Acid (RNA) Language Model

Improving RNA structure prediction through multitask learning on diverse crowdsourced data.

Draw RNA secondary structures in python.

Biological foundation modeling from molecular to genome scale

Gene circuit design using Monte Carlo tree search

A dataset for training and benchmarking deep learning models for RNA structure prediction

gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function

REPrise is de novo interspersed repeat detection software.

Software package for FEP

コードで学ぶAWS入門

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Modelling RBP binding preferences to predict RPB binding sites

Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib and seaborn.

A repository for the final project implementing/applying Boltzmann generators for Computational Statistical Physics (PHYS 7810) at CU Boulder

PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods