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This repository has the supporting code for the manuscript "Neoadjuvant Vidutolimod and Nivolumab in High-Risk Resectable Melanoma" by Davar et al, 2024.
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Updated Oct 10, 2024
Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue"
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
🦖 ClawBio — The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.
An Interface for Immune Receptor and HLA Gene Reference Data
List of Spatial Transcriptomics related Tools organized per category
The agent harness performance optimization system. Skills, instincts, memory, security, and research-first development for Claude Code, Codex, Opencode, Cursor and beyond.
A curated list of awesome skills, hooks, slash-commands, agent orchestrators, applications, and plugins for Claude Code by Anthropic
A light-weight and powerful meta-prompting, context engineering and spec-driven development system for Claude Code by TÂCHES.
CellRank: dynamics from multi-view single-cell data
Skills for the Gemini API, SDK and model/agent interactions
A package for automated processing of single cell RNA-seq data in cancer
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Single-cell analysis in Python. Scales to >100M cells.
scDBic: A novel deep learning-based biclustering algorithm for analyzing scRNA-seq data
Conversational & memory-enabled AI research partner for multi-omics analysis. From biological idea to full research paper.
scRNA-seq analysis of HNSCC tumor microenvironment (GSE181919). Tracking immune changes across normal → leukoplakia → primary tumor → metastasis. T cell exhaustion in HPV+ vs HPV– | R (Seurat 5)
Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
Tutorial for scRNA-seq data analysis beginners using R
from vibe coding to agentic engineering - practice makes claude perfect
AI agents running research on single-GPU nanochat training automatically
A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.