I simply could not get temp files for divergence calc to work correctly w/ singularity no matter what I did with binding, setting the -tmp flag in the earlgrey script, etc. What eventually fixed it was adding os.path.join to most string/path concatenations.
divergence_calc.py
I simply could not get temp files for divergence calc to work correctly w/ singularity no matter what I did with binding, setting the -tmp flag in the earlgrey script, etc. What eventually fixed it was adding
os.path.jointo most string/path concatenations.divergence_calc.py