I am noticing that occasionally I receive an error and EG crashes during steps to find nested or overlapping repeats. This leads to a cascade of issues which ultimately causes EG to fail. This happens twice, but does not halt EarlGrey: (1) at the step before LTR Finder and (2) after running RepeatCraft.
Please let me know what information may be useful. Thanks for your help!
[...]
<<< Resolving Overlapping Repeats >>>
[1] "Searching for Nested TEs. Iteration:1"
Error in `mutate()`:
ℹ In argument: `attributes = paste0(attributes, ";nested=", nested,
"-round", nesting_round)`.
Caused by error:
! object 'nested' not found
Backtrace:
▆
1. ├─... %>% select(-c(nested, nesting_round))
2. ├─dplyr::select(., -c(nested, nesting_round))
3. ├─dplyr::mutate(...)
4. ├─dplyr:::mutate.data.frame(...)
5. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
6. │ ├─base::withCallingHandlers(...)
7. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
8. │ └─mask$eval_all_mutate(quo)
9. │ └─dplyr (local) eval()
10. ├─base::paste0(attributes, ";nested=", nested, "-round", nesting_round)
11. └─base::.handleSimpleError(...)
12. └─dplyr (local) h(simpleError(msg, call))
13. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
[...]
Hi,
I am noticing that occasionally I receive an error and EG crashes during steps to find nested or overlapping repeats. This leads to a cascade of issues which ultimately causes EG to fail. This happens twice, but does not halt EarlGrey: (1) at the step before LTR Finder and (2) after running RepeatCraft.
Please let me know what information may be useful. Thanks for your help!