Data for PYEAST - see: https://github.com/TomLoan/PYEAST

Slowpoke is protocol generator for Golden Gate cloning and colony PCR to be used in Opentrons platforms - OT2 and Flex

Arduino firmware for DIY Nema motor based peristaltic pump

Sequencing analysis pipeline

Pi coding agent extension that allows Pi to autonomously control interactive CLIs in an observable overlay. Full PTY emulation, no tmux, token efficient. User can take over anytime.

⚗️ Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python plat…

PYEAST, a python program to help with cloning in Saccharomyces cerevisiae

Optimization of Robotic Liquid Handling as a Capacitated Vehicle Routing Problem

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

An app to build synthetic gene circuits using the MoClo-YTK system described in "A Highly Characterized Yeast Toolkit for Modular, Multipart Assembly" by Lee et al. (https://pubs.acs.org/doi/abs/10…

An Open-Source web application to plan and document cloning and genome engineering

🪐 Markdown with superpowers: from ideas to papers, presentations, websites, books, and knowledge bases.

COBRApy is a package for constraint-based modeling of metabolic networks.