1. Hosting:

   • Hosted on the BCB-SR shinyapp.io https://ufhcc-bqs.shinyapps.io/projecttrackingapp/
   • Contact me if you need account, token, and secret to authenticate before re-deploying.

2. Data Updates:

   • App updates automatically when project xlsx files are edited in https://www.dropbox.com/scl/fo/6wz676apw47spbbt9zcv3/AEsFkqN560lTK6xae7rcoqM?rlkey=h8m8qz7vks0ur2coldl7txdon&st=y6jtdzy2&dl=0
   • To add PIs and change fields in the project spreadsheet (or make other changes to the site), follow steps in "How to Update" below and/or open an issue.

3. Data Storage:

   • Raw data and reports are hosted on Dropbox, which seems more manageable than HiPerGator. You can use any link you want, though. OneDrive should work too. Set permissions with usual care.
   • Raw sequencing files can be easily copied from /orange to dropbox using globus and dropbox Desktop (files will transfer to your local machine but can be made online only immediately after transfer compeltes.)

# Clone the GitHub repository
git clone https://github.com/HeatherKates/ProjectTrackingApp.git

# Move into the project folder
cd ProjectTrackingApp

• Make desired updates (add new PIs, change PI passwords, update project fields, change visuals, etc.).

# Stage the updated files (whichever you have updated)
git add app.R
git add scripts/init_db.R

# Commit the change with a message
git commit -m "Add a notes field"

# Push changes to the remote GitHub repository
git push origin main

# Redeploy
library(rsconnect)
rsconnect::deployApp()

1. Pull the latest changes from GitHub:

git pull origin main

2. Make changes if needed following steps above.

3. Redeploy the app to ShinyApps.io from your R session:

library(rsconnect)
rsconnect::deployApp()

For issues or questions, contact BCB-SR at hkates@ufl.edu.