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Merged
erinyoung merged 1 commit into from
Dec 16, 2025
Merged

Update devcontainer.json #524

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41 changes: 17 additions & 24 deletions .devcontainer/devcontainer.json
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Original file line number Diff line number Diff line change
@@ -1,28 +1,21 @@
{
"name": "Nextflow Pipeline",
"image": "mcr.microsoft.com/devcontainers/java:17",
"features": {
// Installs Docker and wires up the socket so Nextflow can run containers
"ghcr.io/devcontainers/features/docker-outside-of-docker:1": {
"version": "latest",
"enableNonRootDocker": "true",
"moby": "true"
"name": "Nextflow Pipeline",
"image": "mcr.microsoft.com/devcontainers/java:17",
"features": {
"ghcr.io/devcontainers/features/docker-outside-of-docker:1": {
"version": "latest",
"enableNonRootDocker": "true",
"moby": "false"
},
"ghcr.io/devcontainers/features/common-utils:2": {}
},
// Useful command line tools (curl, git, etc.)
"ghcr.io/devcontainers/features/common-utils:2": {}
},

// This command runs automatically after the container is created
// It downloads Nextflow and moves it to your path
"postCreateCommand": "curl -s https://get.nextflow.io | bash && sudo mv nextflow /usr/local/bin/",

// VS Code customizations (optional but recommended)
"customizations": {
"vscode": {
"extensions": [
"nextflow.nextflow", // Syntax highlighting for Nextflow
"ms-azuretools.vscode-docker" // Docker explorer
]
"postCreateCommand": "curl -s https://get.nextflow.io | bash && sudo mv nextflow /usr/local/bin/",
"customizations": {
"vscode": {
"extensions": [
"nextflow.nextflow",
"ms-azuretools.vscode-docker"
]
}
}
}
}
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