Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2

Metagenomic Analysis in Real Time

Versatile open-source tool for microbiome analysis

SRA Tools

🍃 JavaScript library for mobile-friendly interactive maps 🇺🇦

creating reference databases for amplicon sequencing

The Biocode LIMS plugin integrates Geneious with your lab workflow, allowing you to track processes through tissue sample, extraction, PCR, sequencing and assembly. It is best suited for large scal…

REference Sequence annotation and CuRatIon Pipeline

Distance denoise by Entropy

A taxonomic toolbelt for R

A versatile pairwise aligner for genomic and spliced nucleotide sequences

A reference database manager for R

R package supporting interactive data access on BOLD

🐞 Convert NCBI taxonomy dump into lineages

A catalogue of available long read sequencing data analysis tools

fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads

A fast and sensitive gapped read aligner

v1.0.2

Sequence correction provided by ONT Research

Barcode, Audit & Grade System: An R-based web application for data mining, auditing and annotation of DNA barcode libraries.

TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data

Accurate sample inference from amplicon data with single nucleotide resolution

Fast and accurate sequence demultiplexing

Informatic Sequence Classification Trees

Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes

Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:

Deblur is a greedy deconvolution algorithm based on known read error profiles.

Maximum likelihood demultiplexing