Sequence correction provided by ONT Research

Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2

ARTIC nanopore protocol for nCoV2019 novel coronavirus

motus - a tool for marker gene-based OTU (mOTU) profiling

🐞 Convert NCBI taxonomy dump into lineages

REference Sequence annotation and CuRatIon Pipeline

Deblur is a greedy deconvolution algorithm based on known read error profiles.

Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@ucla.edu), Max Ogden (max@maxogden.com), Lenore Pipes (lpipe…

creating reference databases for amplicon sequencing

Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes

A python package to query different databases of boldsystems.org

Preprocessing tools for unique molecular index (UMI) sequencing reads

TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data

Distance denoise by Entropy

Scripts to visualize the thumbnail images from illumina sequencing machines

Simple and crude scripts that I've written for my own work that may be of help to others with similar tasks

A utility to generate input files for taxonomy assignment in QIIME from the NCBI database

BOLDigger as a commandline tool

Python code and JSON files used for controlling the Opentrons OT-2 Pipetting Robot

Telegram bot written in python, prints labels from images and stickers

UCPH's EvoGenomics section's Opentrons protocol library